Node 68
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0.01	0.99	T	0.99
6	0.02	0.86	0.01	0.11	C	0.86
7	0.89	0	0.11	0	A	0.89
8	0	0	0	1	T	1
9	0.07	0.24	0.13	0.56	T	0.56
10	0	0.25	0	0.74	T	0.74
11	0	0	0	1	T	1
12	0.29	0.56	0.04	0.11	C	0.56
13	0.02	0	0.98	0	G	0.98
14	1	0	0	0	A	1
15	0.01	0.41	0.01	0.57	T	0.57
16	1	0	0	0	A	1
17	0.78	0.01	0.21	0	A	0.78
18	0	0.96	0	0.04	C	0.96
19	0	0.04	0	0.96	T	0.96
20	0	0	0	1	T	1
21	0.97	0	0.03	0	A	0.97
22	0	0	1	0	G	1
23	0.95	0.03	0.02	0.01	A	0.95
24	0.6	0.07	0.28	0.05	A	0.6
25	0	0.99	0.01	0	C	0.99
26	1	0	0	0	A	1
27	0.35	0	0.65	0	G	0.65
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.6	0	0.4	C	0.6
31	0.65	0.32	0.01	0.01	A	0.65
32	0.99	0	0.01	0	A	0.99
33	0.2	0	0.79	0	G	0.79
34	0.04	0.76	0.05	0.15	C	0.76
35	0.45	0.1	0.26	0.19	A	0.45
36	0.08	0.4	0.34	0.17	C	0.4
37	0.14	0.01	0.85	0.01	G	0.85
38	0	0	0	1	T	1
39	0.03	0.2	0.03	0.75	T	0.75
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.28	0	0.72	T	0.72
43	0	1	0	0	C	1
44	0.02	0	0.98	0	G	0.98
45	0.04	0.55	0.04	0.37	C	0.55
46	0.43	0.01	0.54	0.02	G	0.54
47	0.84	0.05	0.1	0.01	A	0.84
48	0.09	0.58	0.1	0.23	C	0.58
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.2	0.24	0.17	0.38	T	0.38
52	0.12	0.86	0.01	0.01	C	0.86
53	0.16	0	0.84	0	G	0.84
54	0.21	0.28	0.17	0.34	T	0.34
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.98	0	0.02	0	A	0.98
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0.05	0.93	0.01	0.01	C	0.93
62	1	0	0	0	A	1
63	0.06	0.13	0.75	0.06	G	0.75
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.95	0	0.05	C	0.95
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.65	0	0.35	C	0.65
70	0.38	0	0.62	0	G	0.62
71	0	0	0	1	T	1
72	0.25	0.04	0.66	0.05	G	0.66
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	0.39	0	0.61	0	G	0.61
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.04	0.61	0.06	0.29	C	0.61
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.72	0	0.28	C	0.72
82	0.88	0	0.12	0	A	0.88
83	1	0	0	0	A	1
84	0.1	0.45	0.09	0.35	C	0.45
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.92	0	0.08	C	0.92
88	0.94	0.04	0.02	0.01	A	0.94
89	0	0	0	1	T	1
90	0.01	0.84	0.01	0.14	C	0.84
91	0.06	0	0.94	0	G	0.94
92	0.95	0.01	0.03	0	A	0.95
93	0.13	0.54	0.12	0.22	C	0.54
94	0.99	0	0	0	A	0.99
95	0.99	0	0.01	0	A	0.99
96	0	0.7	0	0.3	C	0.7
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.96	0	0.04	C	0.96
100	0.68	0.22	0.08	0.02	A	0.68
101	0.97	0	0.03	0	A	0.97
102	0.34	0.02	0.62	0.02	G	0.62
103	0	0.99	0.01	0	C	0.99
104	0.01	0.99	0	0	C	0.99
105	0.1	0.4	0.12	0.38	C	0.4
106	0	0	1	0	G	1
107	0.02	0	0.98	0	G	0.98
108	0	0.92	0	0.08	C	0.92
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.24	0.07	0.61	0.08	G	0.61
112	0.55	0	0.41	0.03	A	0.55
113	0	0.64	0	0.36	C	0.64
114	0.08	0.17	0.64	0.11	G	0.64
115	0	0.97	0	0.03	C	0.97
116	1	0	0	0	A	1
117	0	0.41	0	0.59	T	0.59
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.12	0.36	0.26	0.25	C	0.36
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.02	0.38	0.01	0.59	T	0.59
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.02	0.55	0.02	0.41	C	0.55
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.01	0	0.99	T	0.99
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.33	0.12	0.37	0.18	G	0.37
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.06	0	0.94	0	G	0.94
137	0	0.11	0	0.89	T	0.89
138	0.04	0.39	0.04	0.53	T	0.53
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.23	0	0.77	T	0.77
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0.01	0.94	0.03	0.02	C	0.94
145	0.15	0.11	0.7	0.04	G	0.7
146	0	0	0	1	T	1
147	0.08	0.14	0.28	0.5	T	0.5
148	0.01	0	0.99	0	G	0.99
149	0.96	0.02	0.02	0	A	0.96
150	0.59	0.05	0.32	0.04	A	0.59
151	0.53	0	0.47	0	A	0.53
152	0.48	0.45	0.04	0.04	A	0.48
153	0.08	0.55	0.08	0.29	C	0.55
154	0	0	1	0	G	1
155	0.12	0	0.88	0	G	0.88
156	0.03	0.63	0.03	0.32	C	0.63
157	0.63	0.05	0.27	0.05	A	0.63
158	0.03	0.83	0.03	0.11	C	0.83
159	0.18	0.46	0.13	0.23	C	0.46
160	0.62	0	0.38	0	A	0.62
161	0.2	0.43	0.32	0.05	C	0.43
162	0.24	0.34	0.25	0.17	C	0.34
163	0.34	0.31	0.19	0.15	A	0.34
164	0.9	0.02	0.06	0.02	A	0.9
165	0.55	0.05	0.35	0.05	A	0.55
166	0.13	0.71	0.06	0.1	C	0.71
167	0.06	0.9	0.01	0.02	C	0.9
168	0.36	0.24	0.29	0.12	A	0.36
169	0.4	0.01	0.59	0	G	0.59
170	0.74	0.17	0.05	0.04	A	0.74
171	0.05	0.53	0.06	0.36	C	0.53
172	0	0	0.99	0	G	0.99
173	0.14	0.79	0.04	0.03	C	0.79
174	0.42	0.06	0.46	0.06	G	0.46
175	0	0.88	0	0.11	C	0.88
176	0	0.01	0	0.99	T	0.99
177	0.11	0.01	0.88	0.01	G	0.88
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0.01	0.43	0.01	0.56	T	0.56
181	0	0	0.99	0	G	0.99
182	0.83	0.01	0.02	0.14	A	0.83
183	0.25	0.26	0.42	0.07	G	0.42
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.06	0.5	0.09	0.34	C	0.5
187	0.94	0.05	0.01	0	A	0.94
188	1	0	0	0	A	1
189	0.01	0.68	0.01	0.29	C	0.68
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.84	0	0.15	C	0.84
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0.01	0.59	0.01	0.39	C	0.59
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.65	0	0.35	C	0.65
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.35	0	0.64	T	0.64
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.08	0.18	0.17	0.58	T	0.58
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0.01	0	0.99	0	G	0.99
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.11	0	0.89	T	0.89
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0.96	0	0.04	C	0.96
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.25	0.14	0.47	0.14	G	0.47
220	0	0	1	0	G	1
221	0.99	0	0	0	A	0.99
222	0.53	0.04	0.42	0.02	A	0.53
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.27	0.15	0.4	0.18	G	0.4
226	0.02	0.84	0.05	0.08	C	0.84
227	0.99	0	0.01	0	A	0.99
228	0.27	0.07	0.58	0.08	G	0.58
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0.81	0	0.18	0	A	0.81
232	1	0	0	0	A	1
233	0.05	0.9	0.02	0.04	C	0.9
234	0.31	0.2	0.24	0.26	A	0.31
235	0.44	0	0.56	0	G	0.56
236	0	0	0	1	T	1
237	0.04	0.23	0.06	0.67	T	0.67
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.09	0	0.91	0	G	0.91
241	0.01	0.02	0.02	0.96	T	0.96
242	0.02	0	0	0.98	T	0.98
243	0.02	0.35	0.02	0.61	T	0.61
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.17	0.44	0.19	0.2	C	0.44
247	0.13	0.01	0.86	0.01	G	0.86
248	0.46	0.32	0.16	0.06	A	0.46
249	0.02	0.62	0.02	0.34	C	0.62
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.37	0.08	0.43	0.13	G	0.43
254	0.3	0.32	0.27	0.11	C	0.32
255	0.06	0.61	0.09	0.24	C	0.61
256	0.19	0.04	0.76	0.02	G	0.76
257	0.67	0.12	0.14	0.08	A	0.67
258	0.23	0.12	0.51	0.14	G	0.51
259	0	0.94	0	0.06	C	0.94
260	0	0	0	1	T	1
261	0.25	0.02	0.71	0.02	G	0.71
262	0.95	0.02	0.04	0	A	0.95
263	0.33	0.33	0.2	0.13	C	0.33
264	0.29	0.14	0.45	0.11	G	0.45
265	0.11	0.61	0.11	0.17	C	0.61
266	0	0.59	0	0.41	C	0.59
267	0.43	0.08	0.41	0.08	A	0.43
268	0	0	1	0	G	1
269	0.2	0.01	0	0.78	T	0.78
270	0.23	0.03	0.71	0.03	G	0.71
271	0.15	0.12	0.7	0.03	G	0.7
272	0.96	0	0.03	0.01	A	0.96
273	0.36	0.06	0.52	0.05	G	0.52
274	0.02	0.04	0.88	0.05	G	0.88
275	0.02	0.9	0.06	0.02	C	0.9
276	0.04	0.41	0.03	0.52	T	0.52
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.21	0	0.79	T	0.79
280	0.01	0.98	0	0.01	C	0.98
281	0.02	0	0.98	0	G	0.98
282	0.08	0.69	0.05	0.18	C	0.69
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.06	0	0.94	T	0.94
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0.01	0.65	0.01	0.33	C	0.65
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.9	0	0.1	C	0.9
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.04	0.62	0.04	0.3	C	0.62
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.49	0	0.51	0	G	0.51
301	0	0	0	1	T	1
302	0.03	0.02	0.01	0.94	T	0.94
303	0.01	0.3	0.01	0.68	T	0.68
304	0	0.63	0	0.37	C	0.63
305	0	0	0	1	T	1
306	0.07	0.43	0.33	0.17	C	0.43
307	0.89	0.01	0.07	0.03	A	0.89
308	0.3	0.33	0.35	0.02	G	0.35
309	0.11	0.43	0.07	0.39	C	0.43
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0.05	0.46	0.06	0.43	C	0.46
313	0.17	0.46	0.11	0.25	C	0.46
314	0.94	0	0.06	0	A	0.94
315	0.41	0.18	0.32	0.09	A	0.41
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.03	0.2	0.03	0.74	T	0.74
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.41	0.01	0.57	0.01	G	0.57
325	0.99	0	0.01	0	A	0.99
326	0.03	0.89	0.04	0.04	C	0.89
327	0.17	0.41	0.13	0.29	C	0.41
328	0	0.98	0.01	0.01	C	0.98
329	0.53	0.02	0.26	0.18	A	0.53
330	0.11	0.19	0.24	0.47	T	0.47
331	0.02	0.89	0.04	0.06	C	0.89
332	0.99	0	0.01	0	A	0.99
333	0.21	0.06	0.69	0.05	G	0.69
334	0.04	0.23	0.64	0.09	G	0.64
335	0	0	0	1	T	1
336	0.16	0.24	0.27	0.32	T	0.32
337	0.28	0.3	0.22	0.19	C	0.3
338	0.82	0.01	0.17	0.01	A	0.82
339	0.09	0.59	0.11	0.22	C	0.59
340	0.04	0.04	0.92	0	G	0.92
341	0.99	0	0	0	A	0.99
342	0.91	0.01	0.07	0.01	A	0.91
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.14	0.47	0.18	0.22	C	0.47
346	0.01	0.99	0	0	C	0.99
347	1	0	0	0	A	1
348	0.37	0.05	0.54	0.03	G	0.54
349	0.1	0	0.89	0	G	0.89
350	0	0	0	1	T	1
351	0.12	0.04	0.81	0.03	G	0.81
352	0	0	1	0	G	1
353	0	0.03	0	0.97	T	0.97
354	0.28	0.07	0.57	0.09	G	0.57
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.19	0	0.8	T	0.8
358	0	0	0	1	T	1
359	0	0	0.01	0.99	T	0.99
360	0	0.65	0	0.35	C	0.65
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.35	0.22	0.18	0.25	A	0.35
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	0.98	0	0.02	C	0.98
367	0.18	0.37	0.35	0.1	C	0.37
368	1	0	0	0	A	1
369	0	0.67	0	0.32	C	0.67
370	0.02	0	0.98	0	G	0.98
371	1	0	0	0	A	1
372	0.73	0	0.27	0	A	0.73
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.17	0.36	0.26	0.21	C	0.36
376	0	0.01	0	0.99	T	0.99
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.14	0.51	0.11	0.24	C	0.51
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.27	0	0.73	T	0.73
385	0.67	0.11	0.19	0.04	A	0.67
386	0.15	0.22	0.06	0.57	T	0.57
387	0.01	0.94	0.01	0.05	C	0.94
388	0.04	0.05	0.71	0.19	G	0.71
389	0.01	0	0.99	0	G	0.99
390	0.05	0.4	0.04	0.5	T	0.5
391	0.08	0	0.92	0	G	0.92
392	0.97	0	0.03	0	A	0.97
393	0.03	0.51	0.03	0.44	C	0.51
394	0.49	0.01	0.49	0.01	G	0.49
395	0.96	0.01	0.03	0	A	0.96
396	0	0.99	0	0.01	C	0.99
397	0.01	0.96	0.02	0.02	C	0.96
398	0.36	0.36	0.26	0.03	C	0.36
399	0.4	0.08	0.44	0.07	G	0.44
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.57	0.03	0.36	0.03	A	0.57
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.97	0.01	0.02	0	A	0.97
410	0.34	0	0.66	0	G	0.66
411	0.76	0.03	0.19	0.02	A	0.76
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.97	0	0.03	0	A	0.97
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.06	0.33	0.55	0.06	G	0.55
418	0.04	0	0.96	0	G	0.96
419	0	0	0	1	T	1
420	0.09	0.02	0.87	0.02	G	0.87
421	0	0.99	0	0.01	C	0.99
422	0	0	0	1	T	1
423	0.04	0.79	0.03	0.14	C	0.79
424	1	0	0	0	A	1
425	0.99	0	0.01	0	A	0.99
426	0.96	0	0.03	0	A	0.96
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.17	0.25	0.45	0.13	G	0.45
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0.01	0.88	0.01	0.11	C	0.88
433	0.83	0	0.17	0	A	0.83
434	0	0	0	1	T	1
435	0.01	0.62	0.01	0.36	C	0.62
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.56	0	0.44	C	0.56
442	0.01	0	0.99	0	G	0.99
443	0	0	1	0	G	1
444	0	0.64	0	0.35	C	0.64
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.14	0	0.86	T	0.86
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.98	0	0.01	C	0.98
452	0	0	0	1	T	1
453	0.4	0.12	0.29	0.19	A	0.4
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.64	0	0.36	C	0.64
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCATTTTCGATAACTTAGAACAGTTCAAGCACGTTTATCGCGACGGTCGTAAATGGCAGCGCTGCGTGGAGGCCATCAACAACATCGACAACATCAAGCCCGGCGTGACGCATTCCATTGGCGATTCGCTGGTTTATCGCGTTGAAAACGGCACCACCAAACCAGACGCGCTGTTTGAGGGCAACCGCCGCTACTTTGATGTGCATTACTACCTGGAAGGGCAGGAAACAGTTGAGTTTGCCGACAAAGCCGAGCTGACGCCAGTGGAGGCTTATCGCGATGAAACCGACCGCGAGTTTCTCAGCGGCCAA---GGTGAGACCCATCAGGTTCACGAAGGCCAGGTGGTGATTTTCGAAAACCACGAAGCCTACCGCTTTATCGGTGACGACCCGGTA------AGAAAAGTGGTGCTCAAAGTGACCATCGAAGACGGCTATTTCCTAAACAAATAA

The most probable DNA sequence without gaps is:
ATGATCATTTTCGATAACTTAGAACAGTTCAAGCACGTTTATCGCGACGGTCGTAAATGGCAGCGCTGCGTGGAGGCCATCAACAACATCGACAACATCAAGCCCGGCGTGACGCATTCCATTGGCGATTCGCTGGTTTATCGCGTTGAAAACGGCACCACCAAACCAGACGCGCTGTTTGAGGGCAACCGCCGCTACTTTGATGTGCATTACTACCTGGAAGGGCAGGAAACAGTTGAGTTTGCCGACAAAGCCGAGCTGACGCCAGTGGAGGCTTATCGCGATGAAACCGACCGCGAGTTTCTCAGCGGCCAAGGTGAGACCCATCAGGTTCACGAAGGCCAGGTGGTGATTTTCGAAAACCACGAAGCCTACCGCTTTATCGGTGACGACCCGGTAAGAAAAGTGGTGCTCAAAGTGACCATCGAAGACGGCTATTTCCTAAACAAATAA

The accuracy score for that sequence is 0.835408388520972

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.88337507412573e-44.
The natural log of that probability is -100.254782582992.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	0.9801	M	0.0099	99	
I	0.7743	M	0.1157	6.69230769230769	
F	0.4958	L	0.4942	1.00323755564549	Unreliable
D	0.9604	N	0.0196	49	
N	0.78	S	0.21	3.71428571428571	
L	1	A	0	9999	
E	0.836	D	0.114	7.33333333333333	
Q	0.99	E	0.01	99	
F	1	A	0	9999	
K	0.637065	Q	0.313632	2.03125	
R	0.199992	H	0.19494	1.02591566635888	Unreliable
V	0.8585	I	0.1372	6.25728862973761	
Y	1	A	0	9999	
R	0.98	H	0.0184	53.2608695652174	
D	0.367416	N	0.292572	1.25581395348837	Unreliable
G	0.99	A	0	9999	
R	0.760704	H	0.085312	8.91672918229557	
K	1	A	0	9999	
W	1	A	0	9999	
Q	0.7533	H	0.1767	4.26315789473684	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.62	M	0.2508	2.47208931419458	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.704	K	0.1672	4.21052631578947	
N	1	A	0	9999	
I	0.9306	L	0.0402	23.1492537313433	
D	0.67868	E	0.22325	3.04	
N	0.9801	S	0.0099	99	
I	1	A	0	9999	
K	0.633216	Q	0.204864	3.09090909090909	
P	0.9801	A	0.0099	99	
G	0.98	D	0.02	49	
V	1	A	0	9999	
T	0.352	A	0.2624	1.34146341463415	Unreliable
H	0.97	Y	0.03	32.3333333333333	
S	0.99	A	0	9999	
I	0.99	M	0.01	99	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	0.8366	A	0.1034	8.09090909090909	
Y	1	A	0	9999	
R	1	A	0	9999	
V	0.7	L	0.1244	5.62700964630225	
E	0.864864	D	0.085536	10.1111111111111	
T	0.2385	N	0.213696	1.11607142857143	Unreliable
G	0.8888	D	0.114	7.79649122807018	
T	0.5229	A	0.2241	2.33333333333333	
T	0.2666	A	0.1634	1.63157894736842	
K	0.2754	Q	0.2511	1.09677419354839	Unreliable
P	0.64539	T	0.11817	5.46153846153846	
D	0.388574	N	0.26344	1.475	Unreliable
A	0.7821	E	0.121968	6.41233766233766	
L	0.987723	P	0.008888	111.129950495049	
F	0.99	L	0.02	49.5	
E	0.550539	D	0.271161	2.03030303030303	
G	0.99	A	0	9999	
N	0.9118	H	0.0485	18.8	
R	0.99	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	0.99	A	0	9999	
D	0.76	E	0.25	3.04	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	0.9405	D	0.0594	15.8333333333333	
G	1	A	0	9999	
Q	0.70686	H	0.12474	5.66666666666667	
E	0.99	A	0	9999	
T	0.909	I	0.0308	29.512987012987	
V	0.56	I	0.4136	1.35396518375242	Unreliable
E	1	A	0	9999	
F	0.903168	L	0.057232	15.7808219178082	
A	1	R	0	9999	
D	0.379776	A	0.2752	1.38	Unreliable
K	1	A	0	9999	
A	0.1376	S	0.126515	1.08761806900368	Unreliable
E	0.376808	D	0.132392	2.84615384615385	
L	0.9976	F	0.0024	415.666666666667	
T	0.310365	K	0.23199	1.33783783783784	Unreliable
P	0.3599	L	0.308648	1.16605323864078	Unreliable
V	0.78	E	0.188	4.14893617021277	
E	0.59136	K	0.12672	4.66666666666667	
A	0.792	G	0.0528	15	
Y	1	A	0	9999	
R	0.961674	H	0.017052	56.3965517241379	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
F	0.9212	Y	0.0294	31.3333333333333	
L	0.778	F	0.222	3.50450450450451	
T	0.2937	S	0.26533	1.10692345381223	Unreliable
G	1	A	0	9999	
Q	0.315652	X	0.1777	1.77631963984243	
	0	-	0	0
G	1	A	0	9999	
E	0.98	D	0.02	49	
T	0.8811	I	0.034452	25.5747126436782	
H	0.342804	R	0.257348	1.33206397562833	Unreliable
Q	0.79299	H	0.096921	8.18181818181818	
V	0.6336	L	0.2664	2.37837837837838	
H	0.19926	N	0.185976	1.07142857142857	Unreliable
E	0.892584	Q	0.038808	23	
G	1.01	A	0	9999	
Q	0.9009	H	0.0792	11.375	
V	0.89	M	0.081	10.9876543209877	
V	0.9797	A	0.0303	32.3333333333333	
I	0.99	A	0	9999	
F	0.99	C	0.01	99	
E	0.53	D	0.47	1.12765957446809	Unreliable
N	1	A	0	9999	
H	0.3663	D	0.3465	1.05714285714286	Unreliable
E	0.98	K	0.02	49	
A	1	R	0	9999	
Y	0.99	H	0.01	99	
R	1	A	0	9999	
F	1	A	0	9999	
I	0.3819	T	0.148874	2.56525652565257	
G	0.695871	C	0.16929	4.11052631578947	
D	0.84778	N	0.07372	11.5	
N	0.4704	D	0.4704	1	Unreliable
P	0.342144	Q	0.290304	1.17857142857143	Unreliable
V	0.99	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.61479	K	0.31331	1.96224186907536	
K	1	A	0	9999	
V	1	A	0	9999	
V	0.96	M	0.0348	27.5862068965517	
L	0.9907	F	0.0093	106.52688172043	
K	0.9801	R	0.0099	99	
V	1	A	0	9999	
T	1.01	A	0	9999	
I	0.8217	V	0.17	4.8335294117647	
E	1	A	0	9999	
D	1	A	0	9999	
G	0.9801	S	0.0099	99	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.9869	F	0.0031	318.354838709677	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIIFDNLEQFKRVYRDGRKWQRCVEAINNIDNIKPGVTHSIGDSLVYRVETGTTKPDALFEGNRRYFDVHYYLEGQETVEFADKAELTPVEAYRDETDREFLTGQ-GETHQVHEGQVVIFENHEAYRFIGDNPV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIIFDNLEQFKRVYRDGRKWQRCVEAINNIDNIKPGVTHSIGDSLVYRVETGTTKPDALFEGNRRYFDVHYYLEGQETVEFADKAELTPVEAYRDETDREFLTGQGETHQVHEGQVVIFENHEAYRFIGDNPVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.835621516556291

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 8.31670906119257e-17
The natural log of that probability is -37.0256799498442.

